dreye.govardovskii2000_template#
- dreye.govardovskii2000_template(wavelengths, alpha_max, A_alpha=69.7, a_alpha1=0.8795, a_alpha2=0.0459, a_alpha3=300.0, a_alpha4=11940.0, B_alpha=28.0, b_alpha=0.922, C_alpha=-14.9, c_alpha=1.104, D_alpha=0.674, A_beta=0.26, beta_max1=189.0, beta_max2=0.315, d_beta1=-40.5, d_beta2=0.195)[source]#
Calculate Opsin template according to Govardovskii et al (2000).
- Parameters:
- wavelengthsnp.ndarray
The wavelength array.
- alpha_maxUnion[float, np.ndarray]
The wavelength peak of each filter.
- A_alphaUnion[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 69.7
- a_alpha1Union[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 0.8795
- a_alpha2Union[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 0.0459
- a_alpha3Union[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 300
- a_alpha4Union[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 11940
- B_alphaUnion[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 28
- b_alphaUnion[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 0.922
- C_alphaUnion[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is -14.9
- c_alphaUnion[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 1.104
- D_alphaUnion[float, np.ndarray], optional
Relates to the width and shape of the alpha band, default is 0.674
- A_betaUnion[float, np.ndarray], optional
Determines the proportion of the beta band, default is 0.26
- beta_max1Union[float, np.ndarray], optional
Relates to the peak and shape of the beta band, default is 189
- beta_max2Union[float, np.ndarray], optional
Relates to the peak and shape of the beta band, default is 0.315
- d_beta1Union[float, np.ndarray], optional
Relates to the peak and shape of the beta band, default is -40.5
- d_beta2Union[float, np.ndarray], optional
Relates to the peak and shape of the beta band, default is 0.195
- Returns:
- templatesnp.ndarray of shape (n_filters, n_wls)
The filter templates as a numpy ndarray.
References
[1]Govardovskii, V. I., Fyhrquist, N., Reuter, T., Kuzmin, D. G., & Donner, K. In search of the visual pigment template. Visual neuroscience, 17(4), 509-528, 2000.